Source code for gpm.utils.dask

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"""This module contains utilities for Dask Distributed processing."""
import ctypes
import logging
import os
import platform


[docs] def trim_memory() -> int: os_name = platform.system() if os_name == "Linux": libc = ctypes.CDLL("libc.so.6") return libc.malloc_trim(0) # elif os_name == "Windows": # # Windows does not have a direct equivalent # pass # elif os_name == "Darwin": # # macOS (Darwin) does not have a direct equivalent # pass return -1 # Indicate no operation was performed
[docs] def clean_memory(client): """Call the garbage collector on each process. See https://distributed.dask.org/en/latest/worker-memory.html#manually-trim-memory """ client.run(trim_memory)
[docs] def get_client(): from dask.distributed import get_client return get_client()
[docs] def get_scheduler(get=None, collection=None): """Determine the dask scheduler that is being used. None is returned if no dask scheduler is active. See Also -------- dask.base.get_scheduler """ try: import dask from dask.base import get_scheduler actual_get = get_scheduler(get, collection) except ImportError: return None try: from dask.distributed import Client if isinstance(actual_get.__self__, Client): return "distributed" except (ImportError, AttributeError): pass try: if actual_get is dask.multiprocessing.get: return "multiprocessing" except AttributeError: pass return "threaded"
[docs] def initialize_dask_cluster(minimum_memory=None): """Initialize Dask Cluster.""" import dask import psutil # Silence dask warnings # dask.config.set({'distributed.worker.multiprocessing-method': 'forkserver'}) # dask.config.set({"distributed.worker.multiprocessing-method": "spawn"}) # dask.config.set({"logging.distributed": "error"}) # Import dask.distributed after setting the config from dask.distributed import Client, LocalCluster from dask.utils import parse_bytes # Set HDF5_USE_FILE_LOCKING to avoid going stuck with HDF os.environ["HDF5_USE_FILE_LOCKING"] = "FALSE" # Retrieve the number of processes to run # --> If DASK_NUM_WORKERS is not set, use all CPUs minus 2 available_workers = os.cpu_count() - 2 # if not set, all CPUs minus 2 num_workers = dask.config.get("num_workers", available_workers) # If memory limit specified, ensure correct amount of workers if minimum_memory is not None: # Compute available memory (in bytes) total_memory = psutil.virtual_memory().total # Get minimum memory per worker (in bytes) minimum_memory = parse_bytes(minimum_memory) # Determine number of workers constrained by memory maximum_workers_allowed = max(1, total_memory // minimum_memory) # Respect both CPU and memory requirements num_workers = min(maximum_workers_allowed, num_workers) # Create dask.distributed local cluster cluster = LocalCluster( n_workers=num_workers, threads_per_worker=1, processes=True, memory_limit=0, # this avoid flexible dask memory management silence_logs=logging.ERROR, ) client = Client(cluster) return cluster, client
[docs] def close_dask_cluster(cluster, client): """Close Dask Cluster.""" logger = logging.getLogger() # Backup current log level original_level = logger.level logger.setLevel(logging.CRITICAL + 1) # Set level to suppress all logs # Close cluster # - Avoid log 'distributed.worker - ERROR - Failed to communicate with scheduler during heartbeat.' try: cluster.close() client.close() finally: # Restore the original log level logger.setLevel(original_level)